Plants3D Events


Plants3D hosts speakers each quarter. These talks are placed into existing seminar series, such as the IIGB/CEPCEB Friday noon seminar series. Trainees will interact and host speakers.

Plants3D and others with Mike Nuccio of INARI in fall 2022.

Our seminars are often a hybrid virtual/in-person format.

Our Annual Retreat

Trainees will be introduced to concepts of convergent and translational research during a two-day, off campus early each fall Retreat. Friday night highlights a “mentoring” speaker selected through student involvement. Saturday morning sessions involve formal presentations by students, faculty or guests (i.e., an Advisory Board member, invited speaker or end user). Saturday late afternoon and evening will be devoted to an interactive activity that engages all participants. The activity is modeled after a DARPA challenge and adapted to our program by Ian Wheeldon and Sean Cutler.

Aided by presentations, posters and refreshments, partnerships are formed to develop an improptu “translational or educational collaborations”. On Sunday morning, partners present a two minute (one-slide) Lightening Talk on their collaborative concepts. This retreat activity has seeded collaborations as well as the Ideas Exercise we use in our Design and Entrepreneurship Course.

Each year, some ideas are focused on education, for example research modules for the Dynamic Genome Freshman Biology Lab, led by James Burnette and brainchild of Susan Wessler.

Future Annual Retreat dates

We begin with a keynote lecture on campus and then spend Retreats take place from Friday evening through Sunday lunch at the UCLA Lake Arrowhead Conference Center. Typically, a Keynote Lecture is on campus, so that the entire community can benefit.

Tentative Future dates:
2023: November 17th-19th
2024: November 15th-17th
2025: November 14th-16th

Past Retreats

2022 Retreat Highlights

Preceding the retreat, Prof. Dave Nelson (Plant Biologist) and Prof. Yanran Li (Chemical Engineer) led our 3rd annual Plants3D Design Tournament. Announced in September, this event was widely advertised to graduate students. In a series of three rounds of competition, individuals (round 1), pairs (round 2) and teams (final round), formulate a collaborative project for seed funding. The friendly competition stimulates entrepreneurship, collaboration, and hones communication skills.

The final round of our 3rd Plants3D Design Tournament was presented by 3 teams. The projects were all highly competitive. After evaluation by all present, the Superwomen Saffron team was selected for seed funding. The team aims to develop a new varietal of Crocus sativus. Team members: Taryn Dunivant (Plant Biologist), Eva Ottum (Chemical Engineer), Sabrina Gilmour (Plant Biologist) and Jessica Ho-Woods (Microbiologist).

Our keynote speaker on Friday was metabolomicist Nigel Mouncey, Director of the DOE’s Joint Genomes Research Institute at the Lawrence Berkeley National Lab. The talk, “New keys to unlock the treasure trove of microbial natural products”, described a highly collaborative experimental platform for discovery and study of underexplored natural products (secondary metabolites): from microbes, to mollusks, and plants. The talk was via Zoom to increase participation across campus.

The retreat off campus, surrounded by gorgeous fall colors and the deep blues of Lake Arrowhead. Check out the Retreat Program Page 1, Page 2, Page 3. A highlight for many was the interactive activity. that included 19 pitches, each followed by many questions from the audience.

Participants following the “Lightening Presentations” on inspiring collaborative idea2

The 2021 retreat took place at Lake Arrowhead from November November 19th to 21st.

Day 1: Over 200 campus members participated in a highly interactive Zoom lecture by visionary and engaging plant synthetic biologist Jennifer Nemhauser (U of WA), who described transferring plant signaling circuitry into yeast and animals and highlighted effective online teaching and inclusion strategies.

Later, at the in-person Lake Arrowhead Retreat, we continued our practice of a Lightening Talk event based on ideas developed within a few hours by pairs of participants. Stimulated by Nemhauser’s presentation, three of the 19 teams pitched undergraduate teaching ideas: an app addressing science literacy and vaccine hesitancy, an authentic research project on the “navel” of oranges, and the “Ag 4.0 Shinyapp” for the design of new crops, such as for vertical farming. These and the 16 interdisciplinary research projects presented with a single slide were inspiring. Another retreat highlight was the final presentations 2nd annual Plants3D Design Tournament. This was organized and improved from year 1 by Prof. Robert Jinkerson (Chemical Engineer). The winning team of chemical engineers and a biologist proposes to synthesize a cinamyl plant secondary metabolite in a yeast.

2021 Trainees and Staff in front of the Lodge.

Check out the video from the 2021 Design Tournament Team lead:

Plants3D Trainee Nick Robertson’s Youtube Channel and Explanation of his Plants3D Start-Up Project.

The 2020 Retreat took place virtually on November 13th-14th.

Click here for our 2020 Retreat Program.

2020 Retreat Highlights: The Final Round of our Design Competition was presented by 3 teams. After evaluation by outside judges, 3 projects were funded. In total 17 trainees and 7 faculty were engaged in this tournament.

The keynote talk by synthetic biologist Jay Keasling from UC Berkeley provided inspiration on how engineered microbes can be used for the production of isoprenoid natural and unnatural products. Matt Begemann from Benson Hill and Weslee Glenn from Provivi joined to share and answer questions about their careers in synthetic biology and plant biotechnology.

Retreat 2020 With Wes Glenn
Trainees chatting with Weslee Glenn

The 2019 Retreat took place from November 15th to November 17th at the UCLA Lake Arrowhead Conference Center.

2019 Retreat Participants

2019 Retreat Highlights: Lightning Talks from 19 pairs of students and/or faculty in plant and microbial synthetic biology. Projects ranged from enhancing beneficial plant-microbe relationships to the synthesis of metabolites of citrus in yeast.

The keynote talk by environmental synthetic biologist Joff Silberg from Rice University provided inspiration on microbial sensors for monitoring soils and possibly also plant health.

2019 Retreat Program and Photo Gallery (by Thomas Girke).